SCN5A
Polymorphisms Table
Mutation table - - Polymorphisms - - Locus Table
AA numbering is based on Gene Bank cDNA: NM_000335:
Nucleotide numbering starts from ATG
| Nucleotide Change | Aminoacid Change | Mutation type | Region | Allele Frequency | Reference | |
|---|---|---|---|---|---|---|
| G87A | A29A | SNP | N-term | 0.17(6,7) | Takahata 2003; Chen et al. 2004; Aydin et al 2005 | |
| C100T | R34C | cSNP | N-term | 0.04/ 0.048 (3) | Yang et al. 2002; Mank-Seymour 2006 | |
| T360G | V120I(1) | cSNP | DI-S1 | n.a. | Takahata 2003 | |
| A180G(1) | cSNP | DI-S2 | n.a. | Takahata 2003 | ||
| 1141-3 c>a | SNP, intronic variant | Gouas et al. 2005 | ||||
| 1339-24 g>a | - | SNP, intronic variant | Mank-Seymour 2006 | |||
| T840C | C280C | cSNP | N-term | n.a. | Takahata 2003 | |
| N291H | cSNP | N-term | 0.016(8) | Mank-Seymour 2006 | ||
| C1017T | Y339Y | SNP | ? | Wattanasirichaigoon et al., 1999 | ||
| C1654G | R552G(1) | cSNP | DI-DII | n.a. | Takahata 2003 | |
| IVS9 -3 c>a | - | SNP, intronic variant | 0.14 | Aydin et al 2005 | ||
| IVS10 -24 g>a | - | SNP, intronic variant | 0.15 | Aydin et al 2005 | ||
| A1673G | H558R |
cSNP | DI-DII | 0.08-0.16/ 0.20(6,7, 8, 9) | Iwasa et al 2000; Yang et al 2002; Takahata 2003; Aydin et al 2005; Mank-Seymour 2006 ; Chen et al 2007; | |
| A572D | cSNP | DI-DII | 0.015(8) | Mank-Seymour 2006 | ||
| C1917G | G639G | SNP | DI-DII | n.a. | Takahata 2003 | |
| A2010C | T670T | SNP | DI-DII | n.a. | Takahata 2003 | |
| G2182A | V728I | cSNP | DII S1 | n.a. | Priori et al unpublished | |
| A2667C | L889L | SNP | DII-S5-S6 | n.a. | Takahata 2003 | |
| C2961G | H987Q | cSNP | DII-DIII | n.a. | Takahata 2003 | |
| A3080G | Q1027R | cSNP | DII-DIII | n.a. | Takahata 2003 | |
| G3183A | E1061E | SNP | DII-DIII | 0.12 | Aydin et al 2005 | |
| exon 18 alternative aceptor site | Q1077del(2) | Splice variant | 60% of the 400 allele tested | Makielski et al. 2003 | ||
| C3269T | P1090L | cSNP | DII-DIII | 0.04 | Iwasa et al 2000 | |
| S1103Y | cSNP | DII-DIII | YY:0.0 SY:0.13 SS:0.87 | Splawski et al. 2002; Chen et al. 2004 | ||
| G3578A | R1193Q(4) | cSNP (functional effect shown) | DII-DIII | n.a. | Takahata 2003; Arnestad et al 2007 | |
| T3723C | Y1241Y | SNP | DII-S5-S6 | n.a. | Takahata 2003 | |
| G3873A | L1291L | SNP | ? | Wattanasirichaigoon et al., 1999 | ||
| 4245+82 a>g | L1291L | SNP, intronic variant | 0.328 | Chen et al. 2004 | ||
| 4299 +53 t>c | Intron 12 | SNP, intronic variant | 0.27 | Iwasa et al 2000 | ||
| G4500T | K1500N | SNP | DIII-DIV | ? | Wattanasirichaigoon et al., 1999 | |
| C4509T | S1503S | SNP | DIII-DIV | ? | Wattanasirichaigoon et al., 1999 | |
| IVS24+53 t>c | - | SNP, intronic variant | - | 0.05 | Aydin et al 2005 | |
| IVS24 +114 g>a | - | SNP, intronic variant | - | 0.12 | Aydin et al 2005 | |
| C5454T | A1818A | SNP | C-term | n.a. |
Wattanasirichaigoon et al., 1999 | |
| C5457T | D1819D |
SNP | C-term | 0.01-0.46(7) | Wang et al, 1995a, Wattanasirichaigoon et al., 1999;Iwasa et al 2000; Chen et al. 2004 | |
| C5607T |
D1839D |
SNP | C-term | n.a. |
Shin et al 2004 | |
| G5851T | V1951L | cSNP | C-term | 0.005(5) | Iwasa et al 2000 | |
| F2004L | cSNP | C-term | n.a. | Arnestad et al 2007 | ||
| C6017T | P2006L | cSNP | C-term | n.a. | Arnestad et al 2007 | |
| G6174A | 3' UTR | SNP | 0.449 | Chen et al. 2004 | ||
cSNP = coding SNP, non synonimous nucletotide change: n.a.= not available; (1) -Homozygous change in all patients and controls --> possible ethnic-specific variant. (2) Q1077 is not present in cDNA NM_000335 which has 2015 amino acids but it is present in cDNA AC137587 (2016AA); (3) - Allele frequency in african american- (4) -Found in one Brugada syndrome patient and one healthy japanese subject. This amino acid substitution has also been associated with LQTS. The pathophysiological role is still debated (5) - functional effectcs not reported found in apparently normal individual but the allele frequency is low. (6) - allele frequency reported by Aydin et al 2005;(7) in chinese population allele frequency reported by Chen et al. 2004 : allele frequency of 0.31 among caucasians by Gouas et al. 2005 . (8) Found in patients with drug-induced TdP by Mank-Seymour 2006
.