SCN5A
Polymorphisms Table

Mutation table - - Polymorphisms - - Locus Table


AA numbering is based on Gene Bank cDNA: NM_000335:

Nucleotide numbering starts from ATG

Nucleotide Change Aminoacid Change Mutation type Region Allele Frequency Reference
G87A A29A SNP N-term 0.17(6,7) Takahata 2003; Chen et al. 2004; Aydin et al 2005
C100T R34C cSNP N-term 0.04/ 0.048 (3) Yang et al. 2002; Mank-Seymour 2006
T360G V120I(1) cSNP DI-S1 n.a. Takahata 2003
  A180G(1) cSNP DI-S2 n.a. Takahata 2003
1141-3 c>a   SNP, intronic variant     Gouas et al. 2005
1339-24 g>a - SNP, intronic variant     Mank-Seymour 2006
T840C C280C cSNP N-term n.a. Takahata 2003
  N291H cSNP N-term 0.016(8) Mank-Seymour 2006
C1017T Y339Y SNP   ? Wattanasirichaigoon et al., 1999
C1654G R552G(1) cSNP DI-DII n.a. Takahata 2003
IVS9 -3 c>a - SNP, intronic variant   0.14 Aydin et al 2005
IVS10 -24 g>a - SNP, intronic variant   0.15 Aydin et al 2005
A1673G H558R
cSNP DI-DII 0.08-0.16/ 0.20(6,7, 8, 9) Iwasa et al 2000; Yang et al 2002; Takahata 2003; Aydin et al 2005; Mank-Seymour 2006 ; Chen et al 2007;
  A572D cSNP DI-DII 0.015(8) Mank-Seymour 2006
C1917G G639G SNP DI-DII n.a. Takahata 2003
A2010C T670T SNP DI-DII n.a. Takahata 2003
G2182A V728I cSNP DII S1 n.a. Priori et al unpublished
A2667C L889L SNP DII-S5-S6 n.a. Takahata 2003
C2961G H987Q cSNP DII-DIII n.a. Takahata 2003
A3080G Q1027R cSNP DII-DIII n.a. Takahata 2003
G3183A E1061E SNP DII-DIII 0.12 Aydin et al 2005
exon 18 alternative aceptor site Q1077del(2) Splice variant   60% of the 400 allele tested Makielski et al. 2003
C3269T P1090L cSNP DII-DIII 0.04 Iwasa et al 2000
  S1103Y


and
comments

cSNP DII-DIII YY:0.0 SY:0.13 SS:0.87  Splawski et al. 2002; Chen et al. 2004
G3578A R1193Q(4) cSNP (functional effect shown) DII-DIII n.a. Takahata 2003; Arnestad et al 2007
T3723C Y1241Y SNP DII-S5-S6 n.a. Takahata 2003
G3873A L1291L SNP   ? Wattanasirichaigoon et al., 1999
4245+82 a>g L1291L SNP, intronic variant   0.328 Chen et al. 2004
4299 +53 t>c Intron 12 SNP, intronic variant   0.27 Iwasa et al 2000
G4500T K1500N SNP DIII-DIV ? Wattanasirichaigoon et al., 1999
C4509T S1503S SNP DIII-DIV ? Wattanasirichaigoon et al., 1999
IVS24+53 t>c - SNP, intronic variant - 0.05 Aydin et al 2005
IVS24 +114 g>a - SNP, intronic variant - 0.12 Aydin et al 2005
C5454T A1818A SNP C-term n.a.
Wattanasirichaigoon et al., 1999
C5457T D1819D
SNP C-term 0.01-0.46(7) Wang et al, 1995a, Wattanasirichaigoon et al., 1999;Iwasa et al 2000; Chen et al. 2004
C5607T
D1839D
SNP C-term n.a.
Shin et al 2004
G5851T V1951L cSNP C-term 0.005(5) Iwasa et al 2000
  F2004L cSNP C-term n.a. Arnestad et al 2007
C6017T P2006L cSNP C-term n.a. Arnestad et al 2007
G6174A 3' UTR SNP   0.449 Chen et al. 2004
           

cSNP = coding SNP, non synonimous nucletotide change: n.a.= not available; (1) -Homozygous change in all patients and controls --> possible ethnic-specific variant. (2) Q1077 is not present in cDNA NM_000335 which has 2015 amino acids but it is present in cDNA AC137587 (2016AA); (3) - Allele frequency in african american- (4) -Found in one Brugada syndrome patient and one healthy japanese subject. This amino acid substitution has also been associated with LQTS. The pathophysiological role is still debated (5) - functional effectcs not reported found in apparently normal individual but the allele frequency is low. (6) - allele frequency reported by Aydin et al 2005;(7) in chinese population allele frequency reported by Chen et al. 2004 : allele frequency of 0.31 among caucasians by Gouas et al. 2005 . (8) Found in patients with drug-induced TdP by Mank-Seymour 2006

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