KCNH2 (HERG)
Mutations - - Polymorphisms - - Locus Table
POLYMORPHISMS TABLE
|
Nucleotide Change
|
Aminoacid Change
|
Mutation Type
|
Region | Allele Frequency |
Phenotype
|
Reference
|
|
|---|---|---|---|---|---|---|---|
|
IVS2+27 g>c
|
-
|
Intrronic variant
|
Intron 2 | 0.01(1) |
N
|
||
|
A98C
|
N33T
see also
|
cSNP
|
N.term | Black 0.0 Asian 0.0 White 0.5 Hispanic 0.0 |
N
|
||
|
473-34 a>g
|
-
|
Intronic variant
|
- | - |
(may cause allelic dropout)
|
||
|
C526T
|
R176W
|
cSNP
|
N.term | Black 0.0 Asian 0.0 White 0.05/0.03 Hispanic 0.0 |
N
|
||
|
G542A
|
R181Q
|
cSNP
|
N-term | Black 1.3 Asian 0.0 White 0.0 Hispanic 0.0 |
N
|
||
|
G559A
|
G187S
|
cSNP
|
N-term | Black 0.3 Asian 0.0 White 0.0 Hispanic 0.0 |
N
|
||
|
559-567del
|
187-189GAGdel
|
Deletion (in frame)
|
N-term | Black 1.0 Asian 0.0 White 0.0 Hispanic 0.0 |
N
|
||
|
G568A
|
A190T
|
cSNP
|
N-term | Black 0.3 Asian 0.0 White 0.0 Hispanic 0.0 |
N
|
||
|
G607A
|
A203T
|
cSNP
|
N-term | Black 0.3 Asian 0.0 White 0.0 Hispanic 0.0 |
N
|
||
|
T644G
|
V215G
|
cSNP
|
N-term | Black 0.0 Asian 0.0 White 0.5 Hispanic 0.0 |
N
|
||
|
C751G
|
P251A
|
cSNP
|
N-term | Black 0.0 Asian 0.0 White 0.0 Hispanic 0.8 |
N
|
||
|
C762G
|
H254Q
|
cSNP
|
N-term | Black 0.0 Asian 0.0 White 0.5 Hispanic 0.0 |
N
|
||
|
A769C
|
N257H
|
cSNP
|
N-term | Black 0.3 Asian 0.0 White 0.0 Hispanic 0.0 |
N
|
||
|
C1039T
|
P347S
|
cSNP
|
N-term | Black 0.0 Asian 0.0 White 0.5 Hispanic 0.0 |
N
|
||
|
A1099T
|
T367S
|
cSNP
|
N-term | Black 0.3 Asian 0.0 White 0.0 Hispanic 0.0 |
N
|
||
|
C1056T
|
NA
|
SNP
|
N-term | C: 0.995/T: 0.005 |
N
|
||
|
C1467T
|
I489I
|
SNP
|
S2-S3 | 0.33(2)/0.45(1)/0.19(2) |
N
|
||
| C:0.82/T:0.18 | |||||||
|
C1539T
|
F513F
|
SNP
|
S3 | 0.28(2)/0.43(1)/0.19(2) |
N
|
||
| C:0.82/T:0.18 | |||||||
|
A1692G
|
L564L
|
SNP
|
S5 | 0.06 (2)/0.50(1) |
N
|
||
| A:0.58/G:0.42 | |||||||
|
T1956C
|
Y652Y
|
SNP
|
S6 | 0.12(2)/0.65(1)/0.43(2) |
N
|
||
| C:0.62/T:0.38 | |||||||
|
2146 -61a>g
|
-
|
SNP
|
A:0.50/G:0.50 |
N
(may cause allelic dropoout) |
|||
|
IVS8 +39 g>a
|
-
|
SNP
|
- | 0.28 |
N
|
||
|
IVS8 +40 g>a
|
-
|
SNP
|
- | 0.28 |
N
|
||
|
T2167C
|
C723R
|
cSNP
|
C-term | Black 0.0 Asian 0.0 White 0.5 Hispanic 0.0 |
N
|
||
|
2965 +22 a>g
|
Intron 12
|
SNP
|
C-term | 0.22 |
N
|
||
|
G2617A
|
G873S
|
cSNP
|
C-term | Black 0.3 Asian 0.0 White 0.0 Hispanic 0.0 |
N
|
||
|
C2624T
|
T875M
|
cSNP
|
C-term | - |
N
|
||
| R887H |
cSNP
|
C-term |
N
|
Mank-Seymour 2006 | |||
|
A2690C
|
K897T(3)
|
cSNP
|
C-term | 0.02-0.21(4,5) 0.41(1)/0.25(2) |
Silent
|
||
|
IVS13 +12c>a
|
Intron 13
|
SNP
|
C-term | A:0.01/C:0.99 |
N
|
||
|
C2729T
|
P910L
|
cSNP
|
C-term | Black 0.3 Asian 0.0 White 0.0 Hispanic 0.0 |
N
|
||
|
C2744T
|
A915V
|
cSNP
|
C-term | Black 0.0 Asian 4.5 White 0.0 Hispanic 0.0 |
N
|
||
|
C2750T
|
P917L
|
cSNP
|
C-term | Black 0.0 Asian 0.0 White 1.6 Hispanic 0.0 |
N
|
||
|
G2893A
|
G965R
|
cSNP
|
C-term | ||||
|
C2900T
|
P967L
|
cSNP
|
C-term | Black 0.3 Asian 0.0 White 0.0 Hispanic 0.0 |
N
|
||
|
3067-3069del
|
L1023del
|
Deletion
|
C-term | Black 0.0 Asian 0.0 White 0.5 Hispanic 0.0 |
N
|
||
|
C3103T
|
R1035W
|
cSNP
|
C-term | Black 0.3 Asian 0.0 White 0.0 Hispanic 0.0 |
N
|
||
|
G3140T
|
R1047L
|
cSNP
|
C-term | R:0.96/L:0.04(6) |
N
|
||
|
IVS13 +22a>g
|
Intron 13
|
SNP-Intronic
|
C-term | A:0.10/G:0.90 /0.48(1) |
N
|
||
|
G3164A
|
R1055Q
|
cSNP
|
C-term | ||||
|
C3173A
|
A1058E
|
cSNP
|
C-term | Black 0.3 Asian 0.0 White 0.0 Hispanic 0.0 |
N
|
||
|
A3203G
|
Q1068R
|
cSNP
|
C-term | Black 0.3 Asian 0.0 White 0.0 Hispanic 0.0 |
N
|
||
|
C3322G
|
L1108V
|
cSNP
|
C-term | ||||
|
G3460A
|
G1154S
|
cSNP
|
C-term | ||||
N.A. = not available; cSNP = coding SNP (i.e. polymoprhism having and effect
on protein sequence)
(1) frequency of heterozygotes
(2)
Frequency of the minor allele has been reported by Iwasa et al. only for
Japanese population.. Aditional data reported by Aydin
et al 2004:
(3) Associated with variations in QTc interval
duration (see EP data)
(4) Minor allele frequencies, in drug-induced Torsade de Pointes
by Yang
et al.and by Mank-Seymour
2006. Functional assays not performed. (2)
Allelic frequency of 0.14 in patients with drug-induced QT interval prolongation
(Yang
et al 2002).
(5) Allele frequencies of K897T
according to Ackerman
et al: Black 8.2; Asian 7.5; White 33.1; Hispanic 6.8
(6) Allele frequencies of R1047T
according to Ackerman
et al: Black 0.3; Asian 0.0; White 3.7; Hispanic 0.0