KCNH2 (HERG)

Mutations - - Polymorphisms - - Locus Table

POLYMORPHISMS TABLE

Nucleotide Change
Aminoacid Change
Mutation Type
Region Allele Frequency
Phenotype
Reference
IVS2+27 g>c
-
Intrronic variant
Intron 2 0.01(1)
N
A98C
cSNP
N.term Black 0.0
Asian 0.0
White 0.5
Hispanic 0.0
N
473-34 a>g
-
Intronic variant
- -
(may cause allelic dropout)
C526T
R176W
cSNP
N.term Black 0.0
Asian 0.0
White 0.05/0.03
Hispanic 0.0
N
G542A
R181Q
cSNP
N-term Black 1.3
Asian 0.0
White 0.0
Hispanic 0.0
N
G559A
G187S
cSNP
N-term Black 0.3
Asian 0.0
White 0.0
Hispanic 0.0
N
559-567del
187-189GAGdel
Deletion (in frame)
N-term Black 1.0
Asian 0.0
White 0.0
Hispanic 0.0
N
G568A
A190T
cSNP
N-term Black 0.3
Asian 0.0
White 0.0
Hispanic 0.0
N
G607A
A203T
cSNP
N-term Black 0.3
Asian 0.0
White 0.0
Hispanic 0.0
N
T644G
V215G
cSNP
N-term Black 0.0
Asian 0.0
White 0.5
Hispanic 0.0
N
C751G
P251A
cSNP
N-term Black 0.0
Asian 0.0
White 0.0
Hispanic 0.8
N
C762G
H254Q
cSNP
N-term Black 0.0
Asian 0.0
White 0.5
Hispanic 0.0
N
A769C
N257H
cSNP
N-term Black 0.3
Asian 0.0
White 0.0
Hispanic 0.0
N
C1039T
P347S
cSNP
N-term Black 0.0
Asian 0.0
White 0.5
Hispanic 0.0
N
A1099T
T367S
cSNP
N-term Black 0.3
Asian 0.0
White 0.0
Hispanic 0.0
N
C1056T
NA
SNP
N-term C: 0.995/T: 0.005
N
C1467T
I489I
SNP
S2-S3 0.33(2)/0.45(1)/0.19(2)
N
C:0.82/T:0.18
C1539T
F513F
SNP
S3 0.28(2)/0.43(1)/0.19(2)
N
C:0.82/T:0.18
A1692G
L564L
SNP
S5 0.06 (2)/0.50(1)
N
A:0.58/G:0.42
T1956C
Y652Y
SNP
S6 0.12(2)/0.65(1)/0.43(2)
N
C:0.62/T:0.38
2146 -61a>g
-
SNP
  A:0.50/G:0.50
N
(may cause allelic dropoout)
IVS8 +39 g>a
-
SNP
- 0.28
N
IVS8 +40 g>a
-
SNP
- 0.28
N
T2167C
C723R
cSNP
C-term Black 0.0
Asian 0.0
White 0.5
Hispanic 0.0
N
2965 +22 a>g
Intron 12
SNP
C-term 0.22
N
G2617A
G873S
cSNP
C-term Black 0.3
Asian 0.0
White 0.0
Hispanic 0.0
N
C2624T
T875M
cSNP
C-term -
N
  R887H
cSNP
C-term  
N
Mank-Seymour 2006
A2690C


and comments

cSNP
C-term 0.02-0.21(4,5)
0.41(1)/0.25(2)
Silent
IVS13 +12c>a
Intron 13
SNP
C-term A:0.01/C:0.99
N
C2729T
P910L
cSNP
C-term Black 0.3
Asian 0.0
White 0.0
Hispanic 0.0
N
C2744T
A915V
cSNP
C-term Black 0.0
Asian 4.5
White 0.0
Hispanic 0.0
N
C2750T
P917L
cSNP
C-term Black 0.0
Asian 0.0
White 1.6
Hispanic 0.0
N
G2893A
G965R
cSNP
C-term  
C2900T
P967L
cSNP
C-term Black 0.3
Asian 0.0
White 0.0
Hispanic 0.0
N
3067-3069del
L1023del
Deletion
C-term Black 0.0
Asian 0.0
White 0.5
Hispanic 0.0
N
C3103T
R1035W
cSNP
C-term Black 0.3
Asian 0.0
White 0.0
Hispanic 0.0
N
G3140T
R1047L
cSNP
C-term R:0.96/L:0.04(6)
N
IVS13 +22a>g
Intron 13
SNP-Intronic
C-term A:0.10/G:0.90
/0.48(1)
N
G3164A
R1055Q
cSNP
C-term  
C3173A
A1058E
cSNP
C-term Black 0.3
Asian 0.0
White 0.0
Hispanic 0.0
N
A3203G
Q1068R
cSNP
C-term Black 0.3
Asian 0.0
White 0.0
Hispanic 0.0
N
C3322G
L1108V
cSNP
C-term  
G3460A
G1154S
cSNP
C-term  

N.A. = not available; cSNP = coding SNP (i.e. polymoprhism having and effect on protein sequence)
(1) frequency of heterozygotes
(2) Frequency of the minor allele has been reported by Iwasa et al. only for Japanese population.. Aditional data reported by Aydin et al 2004:
(3) Associated with variations in QTc interval duration (see EP data)
(4)
Minor allele frequencies, in drug-induced Torsade de Pointes by Yang et al.and by Mank-Seymour 2006. Functional assays not performed. (2) Allelic frequency of 0.14 in patients with drug-induced QT interval prolongation (Yang et al 2002).
(5) Allele frequencies of K897T according to Ackerman et al: Black 8.2; Asian 7.5; White 33.1; Hispanic 6.8
(6) Allele frequencies of R1047T according to Ackerman et al: Black 0.3; Asian 0.0; White 3.7; Hispanic 0.0

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